 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_195.14 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
NAC |
| Protein Properties |
Length: 246aa MW: 28057.2 Da PI: 6.1079 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_195.14 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 146.9 | 1e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknra 77
lp GfrF Pt+eelv++yL++k+eg++ +l++vi+ + +++ ePwdLp+ +++++++w+fFs+r++++ +g r++r+
evm.model.supercontig_195.14 4 LPTGFRFYPTEEELVSFYLCHKLEGRRQDLHRVIPVISVFDNEPWDLPElageLCQGDTEQWFFFSPRQEREFRGGRPSRT 84
699***************************99***************9656754455777********************* PP
NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
t+sgyWkatg+ v+s++++++g+kkt+vfykgrap+g+kt+W mheyr+
evm.model.supercontig_195.14 85 TASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGRAPTGRKTKWKMHEYRA 135
*************************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MEELPTGFRF YPTEEELVSF YLCHKLEGRR QDLHRVIPVI SVFDNEPWDL PELAGELCQG 60
DTEQWFFFSP RQEREFRGGR PSRTTASGYW KATGSPSYVY SSDNRVIGVK KTMVFYKGRA 120
PTGRKTKWKM HEYRAIEGAA NPSASAPKLR HEFSLHRIYV ISGSFRAFDR RPLEPVTRET 180
RPVSAGASTS SHVTTVAEKE SSSETSHSGG DHSDFQENIG QTDVEMVDGL EQPLWEWEKL 240
DLDWT*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_B | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_C | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_D | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_A | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_B | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_C | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_D | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
| 4dul_A | 3e-35 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 3e-35 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ478572 | 1e-164 | GQ478572.2 Carica papaya clone BAC DM105M02, complete sequence. |
| GenBank | GQ478573 | 1e-164 | GQ478573.2 Carica papaya clone BAC SH18O09, complete sequence. |
