 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_19.121 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
ERF |
| Protein Properties |
Length: 377aa MW: 40842.3 Da PI: 4.8037 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_19.121 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 60.4 | 4.1e-19 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a+k+++g
evm.model.supercontig_19.121 80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVEAALAYDEAAKAMYG 130
56*****999.**********8...3.35************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0010286 | Biological Process | heat acclimation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MGTFDQAPNV TSIAVDSSRK RKSRSRRDGT SVAETLKKWK EYNEHLDASG DGGKPARKVP 60
AKGSKKGCMK GKGGPENSRC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAVEAALA 120
YDEAAKAMYG PCALLNLPHA EDLVCFGTAS GSSVATPSGS DSTTTSSHSE VCAADDIKQE 180
FVAIPGLKKE DGQGEARPNA YPHAVIETAT PSSTMKLEAK DGDANIKKLH SGEYHGIKGE 240
AVDYSKDVKS EGKEDESQDY WQTFSMDEMF DVDDLLGAID NDPLVGTGLK QEFDYPPVQV 300
GITDSRLQSE KSSALAYQLQ NPDAKLLGSL HHMEQLPSTV DYGLALLQAQ EHGDNNIELD 360
GQGFMDMDIG LEDLDF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 6e-18 | 81 | 138 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 3e-17 | 82 | 143 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 17 | 22 | SRKRKS |
| 2 | 20 | 27 | RKSRSRRD |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ432868 | 0.0 | KJ432868.1 Carica papaya cultivar Maradol dehydration-responsive element-binding protein 2A mRNA, complete cds. |
