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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_151.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35861.5 Da PI: 7.1823 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 78 | 126 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f ta+eAa+a+++ ++k++g evm.model.supercontig_151.30 78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAKEAARAYDREARKIRG 126 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.288 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 77 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.4E-37 | 77 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-11 | 78 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-31 | 78 | 135 | No hit | No description |
PRINTS | PR00367 | 3.2E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MCGGAIIADF IPRNRSRRIT AFDLWPGSPF ANFNCNDSEK KLSRPEPPRQ EPVSFKRTLP 60 TSGDEVEKKA KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA KEAARAYDRE 120 ARKIRGKKAK VNFPNEDDEF TVPTQTQKSN HNPPAIWNPA PPPYQTQNPR ANFNSIDFEF 180 GYDLNQVGGS FSRNSTGFNE NHAANAMSNE AVICCCEENS GTGTRSGSEC GYSYSPGFTG 240 CNQNSNNNGG VRVKEEEQEE EENEVRKLSE ELMAYENYMK FYQIPYLDGQ SPAQNTAAQE 300 SVVGDLWSFD DAPVTSGAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 78 | 136 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 73 | KAKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_151.30 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889242.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A2P5AVG4 | 1e-104 | A0A2P5AVG4_PARAD; AP2/ERF transcription factor | ||||
STRING | evm.model.supercontig_151.30 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-40 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_151.30 |