PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 260aa    MW: 29531.1 Da    PI: 9.3731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1880128355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+G+r+++ +g+W+AeIrdp+    r  r++lg+f taeeAa a+++ ++k++g
  evm.model.supercontig_151.29  80 YRGIRQRP-WGKWAAEIRDPT----RgVRVPLGTFNTAEEAALAYDREARKIRG 128
                                   9*******.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.36379136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2779136IPR001471AP2/ERF domain
SMARTSM003806.2E-3179142IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-1979136IPR016177DNA-binding domain
CDDcd000189.05E-2680134No hitNo description
PfamPF008475.5E-1180128IPR001471AP2/ERF domain
PRINTSPR003673.5E-98091IPR001471AP2/ERF domain
PRINTSPR003673.5E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAIVADF IRRIRSRIIT AVEHWPNSTP ANSDCNDSDK KLNRPEPTRH EPVSLKRTLP  60
TSGDEKQMEK RAKRQRKNLY RGIRQRPWGK WAAEIRDPTR GVRVPLGTFN TAEEAALAYD  120
REARKIRGKK AEVNISNEDD EFGGSTQTQD YNHNPPAIWN PALPLCQTQN RRANATTNKV  180
VIYCCEKNSG TGIESRSDYG GVRVKEEEQT VEAEEKIKRG AEIVRGAMAW ENYMKFYQVP  240
NLDRQPMEQN TTAQEIRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1980135359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1980135662ATERF1
3gcc_A4e-1980135662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_151.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889229.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2C9WN321e-62A0A2C9WN32_MANES; Uncharacterized protein
STRINGevm.model.supercontig_151.290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-34ethylene-responsive element binding protein