 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_14.38 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
AP2 |
| Protein Properties |
Length: 389aa MW: 44372.6 Da PI: 8.0782 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_14.38 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 33.2 | 1.3e-10 | 72 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a+ k++g
evm.model.supercontig_14.38 72 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEEAAARAYDLAAIKYWG 128
789******************88887784446666.9*******************98 PP
|
| 2 | AP2 | 52.4 | 1.3e-16 | 171 | 222 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g
evm.model.supercontig_14.38 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222
89****99**********99966...3.6*************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MEMIMVKNEE IQGRRRVYIP SDGEIQEKRC VKRRRREPAS AAVGCYNDNQ NQQQQPSDHQ 60
TSSAATTVKR SSRFRGVSRH RWTGRFEAHL WDKLSWNVTQ KKKGKQGAYD EEEAAARAYD 120
LAAIKYWGKS TFTNFPIPEY EAEIEIMQNL TKEEYLASLR RKSSGFSRGV SKYRGVARHH 180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGIHAVTNFD LSSYIRWLKP 240
AANAGNHEPA EKLVTPVLML RDEAKPPFLS SNSFSATAKF INSPAEDQQV FQAKLPVINS 300
YNKSSSPTAL DLLLRSSIFR ELMEKNSSNV SDQDEADYGD AEIKNIQLVA SDHDDDFGGF 360
NFYDEVTEVP FICSTNKHLE ERELQIIL*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 13 | 35 | RRRVYIPSDGEIQEKRCVKRRRR |
