PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_41265.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 205aa    MW: 23361 Da    PI: 6.0255
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_41265.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.94.7e-5632127297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            +eqdrflPianv+rimkkv+Pan+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl+k
  evm.TU.contig_41265.1  32 KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVAPLKLYLSK 119
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            yr++egek
  evm.TU.contig_41265.1 120 YRDIEGEK 127
                            *****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-5425152IPR009072Histone-fold
SuperFamilySSF471135.0E-4134158IPR009072Histone-fold
PfamPF008082.3E-2737101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-196583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.2E-1984102No hitNo description
PRINTSPR006153.2E-19103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEDEISHGNF LREASPESPC LKTTNNHSTN NKEQDRFLPI ANVGRIMKKV IPANGKISKD  60
AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDVIWA ITTLGFEDYV APLKLYLSKY  120
RDIEGEKLNI PKQQRSDQRQ QQQQQQTQHE QEHNLPYNSL YSSTTLMSQP SFVTADQPFS  180
LPFSPTSIQK QLQQQDQIDS VGHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4432122292Transcription factor HapC (Eurofung)
4g92_B1e-4432122292Transcription factor HapC (Eurofung)
5g49_A1e-4432122797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_41265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910950.11e-152nuclear transcription factor Y subunit B-7
SwissprotQ9SIT95e-74NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2C9UX021e-107A0A2C9UX02_MANES; Uncharacterized protein
STRINGevm.TU.contig_41265.11e-152(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-67nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]