PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_31438.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 340aa    MW: 38511.7 Da    PI: 7.284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_31438.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05173192120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++Cp C k+F+   nL+ H+
  evm.TU.contig_31438.1 173 FSCPVCYKTFNKYNNLQMHM 192
                            89*****************9 PP
2zf-C2H217.61.1e-05257279123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C +CgksF  k + ++H +++
  evm.TU.contig_31438.1 257 FTCRKCGKSFAVKGDWRTHEKNC 279
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-5166195No hitNo description
PROSITE profilePS5015710.138173200IPR007087Zinc finger, C2H2
SMARTSM003550.56173195IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-4173192IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-6241277No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6243277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.891257277IPR007087Zinc finger, C2H2
SMARTSM0035528257277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTDPYSSNLF NGWFNFIPSH HPYYSSSSCY PFSSNNNYNC YSTNAPISSI TVPSSPPLRE  60
ALPLINYLNS TTRYQDQQEH SSSNSMEEDN KCKIMNRGAK ESFLFSSTEE DESGVALQIG  120
LPSPSSDLGI SQSDPEMADK EVSAVSEYPF ETLNKGQYWI PTPSQILIGP TQFSCPVCYK  180
TFNKYNNLQM HMWGHGSQYR KGPDSLKGSQ PTAMLRLPCY CCAPGCKHNI DHPRARPLKD  240
FRTLQTHYKR KHGTKPFTCR KCGKSFAVKG DWRTHEKNCG IIWYCICGSD FKHKRSLKDH  300
IRAFGYGHAA LNNNCVDFFL QEDDEPASEI EHDGEQSCSX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_31438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1357702e-87BT135770.1 Medicago truncatula clone JCVI-FLMt-15M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911594.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1J7H0121e-150A0A1J7H012_LUPAN; Uncharacterized protein
STRINGevm.TU.contig_31438.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]