PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_170126
Common NameCOCSUDRAFT_48746
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ERF
Protein Properties Length: 545aa    MW: 54498.1 Da    PI: 7.2412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_170126genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20283332255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  +y+GVr+++ +g+++AeIrdps+     r +lg+f+taeeAa a++aa+++++g
  estExt_fgenesh1_pg.C_170126 283 KYRGVRQRP-WGKFAAEIRDPSK---GSRLWLGTFDTAEEAALAYDAAARRIRG 332
                                  8********.**********965...4************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-21283340IPR016177DNA-binding domain
PfamPF008473.3E-13283332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-31283340IPR001471AP2/ERF domain
SMARTSM003801.1E-37283346IPR001471AP2/ERF domain
PROSITE profilePS5103223.09283340IPR001471AP2/ERF domain
CDDcd000185.26E-18283340No hitNo description
PRINTSPR003671.2E-10284295IPR001471AP2/ERF domain
PRINTSPR003671.2E-10306322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MALALALHVS CLLLAEGEEV PTTVPAPAFL MTGWPVQSAV QSAVQSAAAG SLSRSLASSG  60
PMAIPQQRSL PPLAPAASSL NGNSPGVGSL PLGMPAELFA GASGMSLPQL QQGGPALFGV  120
SPSGSGGTGG LQSIELFQRS GLRPLGGSLP LHLPRSGLYG MSNLHIAPLD LGSSVAGNGG  180
SLGPVSSSVD SEATFSDALF GSSAPSPSTV LPIHHPQQRM KSPLSEAASG EEKGGRPRST  240
LSSQLAAGGR KGSAAGITKK IAGVTGAGKV NGVASKAASG PVKYRGVRQR PWGKFAAEIR  300
DPSKGSRLWL GTFDTAEEAA LAYDAAARRI RGDAAITNFR PGEGPSTPVN LDFLAAALGG  360
EESDAPSEGS DPKDASRIAG IGGFVAGSSA PAAFPAAASM AMHLTRSVRA AGAGSSPVAA  420
FSAAVQPLTP PASALRHGAS ADGQAPFASS ESADASGDSA GGAMDEDDLF VGAMDIDDGG  480
NVAGPNLAVA GRQRRTIGDD EDMSEVAEIM LNLKVQERNG RRKSLDQVTP AQRTSLRRSL  540
RGIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22284339662ATERF1
3gcc_A2e-22284339662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644527.10.0AP2-domain-containing protein
TrEMBLI0YNL40.0I0YNL4_COCSC; AP2-domain-containing protein
STRINGXP_005644527.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-15related to AP2 6
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]