PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8763_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 267aa    MW: 29630.9 Da    PI: 6.5206
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8763_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15968155
                                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                                        s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  cra_locus_8763_iso_3_len_800_ver_3  9 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDQEEKAARAYDLAALKYWG 68
                                        789******************655454478446*************************98 PP
2AP226.12.2e-08921401255
                                 AP2  12 rgrWvAeIrdpse..ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                         r+ +vA++r   e   g    +k  +lg+f t eeAa+a++ a+ k++g
  cra_locus_8763_iso_3_len_800_ver_3  92 RQEFVAHLRRKMEarIGrvaGNKDLYLGTFSTQEEAAEAYDIAAIKFRG 140
                                         5678888888767541256556************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-20978No hitNo description
SuperFamilySSF541713.47E-17978IPR016177DNA-binding domain
PROSITE profilePS5103218.7821076IPR001471AP2/ERF domain
SMARTSM003803.8E-281082IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-161077IPR001471AP2/ERF domain
PfamPF008473.8E-121068IPR001471AP2/ERF domain
PRINTSPR003671.2E-61122IPR001471AP2/ERF domain
PROSITE profilePS5103214.07865148IPR001471AP2/ERF domain
SMARTSM003805.1E-2095154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-13100148IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-12101150IPR016177DNA-binding domain
CDDcd000181.72E-17102150No hitNo description
PRINTSPR003671.2E-6130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
XDTFGQRTSQ FRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD QEEKAARAYD  60
LAALKYWGPT THINFPLSTY ERELEEMKNM TRQEFVAHLR RKMEARIGRV AGNKDLYLGT  120
FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDGKEYAPA LAKRNSSTLD QDYNSCASSS  180
SSPHESLLAI TNNNGENHPD ELTGMVWSNP QSPKNLGTGG SSSGDPAGMG GGEFGYYSND  240
QGGNGNGNGN QMVLGNQVPV FALWNEX
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065154.11e-114PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_022724291.11e-114AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_024629696.11e-114AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-91AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ32e-90AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A059BYZ21e-112A0A059BYZ2_EUCGR; Uncharacterized protein
STRINGXP_010065154.11e-113(Eucalyptus grandis)
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]