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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_86428_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 137aa MW: 15376.2 Da PI: 9.1164 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 3.9e-39 | 48 | 106 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk+k cra_locus_86428_iso_1_len_624_ver_3 48 PDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKP 106 68999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 47 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 50 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.183 | 52 | 106 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 54 | 90 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
XYMAANGGIK LFGATIEIQQ QGRSQLAKLE KEEAEKGGDR NLHQLKRPDK IIACPRCKSM 60 ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG ALRNVPVGAG RRKSKPPCSR GGLSDGCLFD 120 ASAEVHRFDF DGVVEEW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00166 | DAP | Transfer from AT1G29160 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103030.2 | 6e-61 | dof zinc finger protein DOF1.5 isoform X2 | ||||
Refseq | XP_024025645.1 | 1e-60 | dof zinc finger protein DOF1.5 isoform X1 | ||||
Swissprot | P68350 | 3e-48 | DOF15_ARATH; Dof zinc finger protein DOF1.5 | ||||
TrEMBL | W9RVG9 | 2e-59 | W9RVG9_9ROSA; Dof zinc finger protein | ||||
STRING | XP_010103030.1 | 3e-60 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7240 | 22 | 32 |
Publications ? help Back to Top | |||
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