PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7165_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | CAMTA | ||||||||
Protein Properties | Length: 162aa MW: 18963.6 Da PI: 9.7039 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.5 | 8.7e-52 | 47 | 159 | 3 | 114 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76 +e k+rwl+++ei+aiL n++ ++++ ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg cra_locus_7165_iso_2_len_729_ver_3 47 EEaKARWLRPNEIHAILYNYKYFNVQVKPVNLPASGTMVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVG 121 45599********************************************************************** PP CG-1 77 gvevlycyYahseenptfqrrcywlLeeelekivlvhy 114 + e +++yYah+e+nptf rrcywlL+++le+ivlv y cra_locus_7165_iso_2_len_729_ver_3 122 NEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVPY 159 ************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 71.465 | 42 | 162 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.1E-70 | 45 | 162 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.9E-46 | 48 | 160 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
LKXSVGDSSR VEKEFISMDN IIAGRLVGTE IHGFRTMGDL DMANILEEAK ARWLRPNEIH 60 AILYNYKYFN VQVKPVNLPA SGTMVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV 120 GNEERIHVYY AHGEDNPTFV RRCYWLLDKS LEHIVLVPYF LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898630.1 | 2e-81 | calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 4e-69 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A151RXL8 | 1e-77 | A0A151RXL8_CAJCA; Calmodulin-binding transcription activator 6 | ||||
STRING | evm.model.supercontig_929.1 | 4e-81 | (Carica papaya) |
Publications ? help Back to Top | |||
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