PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19019_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 290aa MW: 32710.1 Da PI: 10.3862

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19019_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.5	8e-37	75	218	3	132
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......... 65 k drhski T++g+R RRvRls+e+ ++fFdLqd LGfdk+skt++WL+q++ ++ikel + cra_locus_19019_iso_1_len_1151_ver_3 75 EKSDRHSKIITAKGPRNRRVRLSMEIGRKFFDLQDLLGFDKASKTLDWLFQKSHTSIKELIRMknivddddpr 147 589**********************************************************7777754444 PP TCP 66 .....ssssaseceaesssssasnsssg............kaaksaakskksqksaasalnlakesrakarar 121 s+s++ +c + + ++k+++k + ++k+a++++ + + r+kar+r cra_locus_19019_iso_1_len_1151_ver_3 148 akislSFSDQLSC-E------------NsldllkksttakPKKKKKKKMEATEKKAKENNGVREGLRKKARER 207 3333333333333.2............1222232222222333333355555555555667777888** PP TCP 122 arertrekmri 132 arert++k + cra_locus_19019_iso_1_len_1151_ver_3 208 ARERTKQKLVL 218 *****9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-36	75	215	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.998	76	134	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	8.783	198	215	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MFCFTTNTTG ISLPPQHQLS PYLDHLPSSS SVENLLQYTD LLSHCSLRSN PTISSTTKST 60 NNGDDQGRRK RRKSEKSDRH SKIITAKGPR NRRVRLSMEI GRKFFDLQDL LGFDKASKTL 120 DWLFQKSHTS IKELIRMKNI VDDDDPRAKI SLSFSDQLSC ENSLDLLKKS TTAKPKKKKK 180 KKMEATEKKA KENNGVREGL RKKARERARE RTKQKLVLRK LISISSAEAE AETSSISSSI 240 GSNICGLWCC FDQPNLLITS RESTSSNFSH WDSSSSSLCA FTTADQQEAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	180	KPKKKKKK
2	175	181	KKKKKKK
3	177	188	KKKKKMEATEKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59