PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold09883-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 297aa    MW: 32526.3 Da    PI: 8.6253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold09883-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181257147
                                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                          +g+W++eEde l ++v+++G ++W+ I++ +  gR++k+c++rw + 
  augustus_masked-scaffold09883-abinit-gene-0.1-mRNA-1 12 KGPWSPEEDEMLRKLVQRHGARNWSVISKAIS-GRSGKSCRLRWCNQ 57
                                                          79******************************.***********985 PP
2Myb_DNA-binding582.2e-1866108347
                                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                           ++++eEd l+v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  augustus_masked-scaffold09883-abinit-gene-0.1-mRNA-1  66 AFSAEEDNLIVEAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 108
                                                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.318762IPR017930Myb domain
SuperFamilySSF466896.83E-329105IPR009057Homeodomain-like
SMARTSM007174.4E-161160IPR001005SANT/Myb domain
PfamPF002497.2E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-251365IPR009057Homeodomain-like
CDDcd001671.94E-151456No hitNo description
SMARTSM007178.9E-1663111IPR001005SANT/Myb domain
PROSITE profilePS5129421.19764113IPR017930Myb domain
CDDcd001675.24E-1366109No hitNo description
PfamPF002491.0E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEATQRDLDR VKGPWSPEED EMLRKLVQRH GARNWSVISK AISGRSGKSC RLRWCNQLSP  60
EVEHRAFSAE EDNLIVEAHA KYGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFSSMSDDT  120
TTTTTTTTTT TADESLNRPR KKSNPGSGSG LCYSPSSPSG SDVSDSGHPA ISTEHVTRPL  180
ARTNAIYFMP SHQDESPPPP PPPSQSNINI NKNKEPSTLL TLGLPGTSTT TTTAESQTEL  240
TSCGSAPTLR AFDDNNVNNK SPPLKKSNDL VPPELLAVMQ DMIKIEIKNY MAALLGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-40111133105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-391111357159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-391111357159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-40111133105C-Myb DNA-Binding Domain
1msf_C6e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924562.11e-161transcription factor MYB44-like
TrEMBLA0A2I4F6X71e-110A0A2I4F6X7_JUGRE; transcription factor MYB44-like
STRINGEMJ004981e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.19e-65myb domain protein 70