PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold07365-abinit-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 107aa MW: 12237.5 Da PI: 4.137

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold07365-abinit-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29	2.7e-09	1	25	31	55
AP2 31 fslgkfgtaeeAakaaiaarkkleg 55 ++lg+f taeeAa+a+++a+ k++g augustus_masked-scaffold07365-abinit-gene-0.4-mRNA-1 1 VWLGTFKTAEEAARAYDKAAIKFRG 25 7**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.3E-17	1	34	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.144	1	33	IPR001471	AP2/ERF domain
CDD	cd00018	7.90E-19	1	35	No hit	No description
Pfam	PF00847	7.0E-5	1	25	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-11	1	35	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-9	1	39	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
VWLGTFKTAE EAARAYDKAA IKFRGPRAKL NFPLSDYEVE RDDQHDEQAQ EVNPNVNVKM 60 MAESDTQIVK DMAKSSGKEN ELLDAITMEE LEQWMMDWPD NANDSTP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886787.1	2e-63	ethylene-responsive transcription factor ERF071-like
Swissprot	O22259	5e-13	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	A0A2N9H8T2	5e-24	A0A2N9H8T2_FAGSY; Uncharacterized protein
STRING	POPTR_0009s10470.1	5e-20	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	4e-09	redox responsive transcription factor 1

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]