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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold07365-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 24685.3 Da PI: 4.8623 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W++eIrdp+e +kr +lg+f taeeAa+a+++a+ k++g augustus_masked-scaffold07365-abinit-gene-0.0-mRNA-1 75 RYRGVRQRP-WGKWASEIRDPRE---KKRKWLGTFQTAEEAARAYDKAAIKFRG 124 8********.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.64E-35 | 74 | 134 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-24 | 75 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-40 | 75 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-13 | 75 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.04 | 75 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-33 | 75 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MWCPWRTIIT EEQEYDIMVS ALKHVITGGI HGLTPQHHQL LEQQPVLASA ATLSLPSTSK 60 RSSKKKKEKN DNEKRYRGVR QRPWGKWASE IRDPREKKRK WLGTFQTAEE AARAYDKAAI 120 KFRGPRAKLN FPLSDDGEKP NDVEEDQVAE QDHNLEVNPN VNAETMTESE TQTTEVANGN 180 DEENEFLDWF TLEELEGLLN GWPDNLNDPT NDSTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-23 | 74 | 133 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 67 | KRSSKKKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912581.1 | 1e-125 | ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | A0A2N9H8T2 | 3e-51 | A0A2N9H8T2_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-20 | redox responsive transcription factor 1 |