PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02231-abinit-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 317aa    MW: 35834.9 Da    PI: 5.1508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02231-abinit-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-1999148255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +++GVr ++ +grW+AeIrdp     +   r++lg+++taeeAa  +++a+ +++g
  augustus_masked-scaffold02231-abinit-gene-0.9-mRNA-1  99 RFRGVRLRP-WGRWAAEIRDP-----HqkVRIWLGTYDTAEEAALVYDKAAIRIKG 148
                                                           79*******.**********7.....335***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-3298155No hitNo description
PfamPF008476.5E-1299148IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2199155IPR016177DNA-binding domain
PROSITE profilePS5103222.19499156IPR001471AP2/ERF domain
SMARTSM003803.0E-3699162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2899155IPR001471AP2/ERF domain
PRINTSPR003671.8E-9100111IPR001471AP2/ERF domain
PRINTSPR003671.8E-9122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNDSVKYTEH RKITNKLVKS LGTQFPVPNA EKPKIVRISV TDADATDSSG SEDEKEASIH  60
RHRHRVKRLV NEIRIEDFSH YVSSRAGPKT KQASSAVKRF RGVRLRPWGR WAAEIRDPHQ  120
KVRIWLGTYD TAEEAALVYD KAAIRIKGPD AHTNFLKPPA PEQVVVSGDY DSGQESNQIM  180
TVSPVSSSSC CKAQQKPDID VGNCYDCDNS GKDSQSHSHS VYSPTSVLRF QPVELGTEAE  240
SDWKPVAEEM DFRCFNDYCF DSQTLQAPPP PMFLDDDMRV QETYIKEEVF CDISVDVLDA  300
DFGSCKWDVE DYFQDPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1998155159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1998155462ATERF1
3gcc_A5e-1998155462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920572.10.0ethylene-responsive transcription factor CRF5-like
TrEMBLA0A2N9F4521e-106A0A2N9F452_FAGSY; Uncharacterized protein
STRINGEOX957898e-71(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-46cytokinin response factor 4