PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02044-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 553aa    MW: 62989.3 Da    PI: 4.5908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02044-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-191269155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpseng....krkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++y+GVr++  +g+WvAeIr+p ++     k+ r +lg+f++a eAa a+++a+k+++g
  augustus_masked-scaffold02044-abinit-gene-0.4-mRNA-1 12 CKYRGVRQRT-WGKWVAEIREPFIGDpaprKSSRLWLGTFDSAVEAALAYDEAAKAMYG 69
                                                          79*****999.**********88844579666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-131269IPR001471AP2/ERF domain
CDDcd000188.09E-301277No hitNo description
Gene3DG3DSA:3.30.730.105.1E-281378IPR001471AP2/ERF domain
PROSITE profilePS5103221.971377IPR001471AP2/ERF domain
SMARTSM003801.3E-331383IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-191377IPR016177DNA-binding domain
PRINTSPR003672.6E-91425IPR001471AP2/ERF domain
PRINTSPR003672.6E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MPGKGGPENS GCKYRGVRQR TWGKWVAEIR EPFIGDPAPR KSSRLWLGTF DSAVEAALAY  60
DEAAKAMYGN LARLNFPKYR EESTYSNVLS SGTFKTSPKE LSDSYDVGEV KKSMMNNLSP  120
AGKLYRSKVP VKESEEKRNC SEACVSNEST EELKVTPERS DQLKKERSEG CIRSQNNETE  180
ELKLEHTLRQ PIKVKCKLRS DTNPSNDVEV EMSTVSKEME GELTGGLKSS GFNNNRLHYE  240
PMDAAPNTSI HCKSSDDAEI DMMEMREETN GEFAEALNSG DDFNGLYDLL HGVTTDVDYD  300
PRTDNMAIMR DEKMGELSEI CIFNDYIDSH NTYDVFDSHN TYDVSHDAPI DVNCNQLSYC  360
KPCNVEGEMP MMKNKMKREL SDITGFHYFN SFNDHSNDLH NPSFNVVKSD KALTREDMQE  420
NFTDSGYSYG FDNRSRYLHN WSTNRAIEPL GDGSSVNSTL KQEGNDDLGY PLRGWSSCFS  480
HRLQYSDTCL PGSSNQKQDL DSGVDFNLDL LKPDYNFGSS EQHTQPEFVK SEYDNRFMEE  540
QQYFDLCFPK WEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-171477360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913575.10.0uncharacterized protein LOC112025144, partial
TrEMBLA0A2N9G9H60.0A0A2N9G9H6_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-21ERF family protein