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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01894-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 38149.8 Da PI: 5.1706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 187 | 237 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta +Aaka+++a+ kl+g augustus_masked-scaffold01894-abinit-gene-0.0-mRNA-1 187 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIDAAKAYDRAAFKLRG 237 7********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 186 | 246 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.92E-31 | 187 | 245 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-22 | 187 | 246 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-36 | 187 | 251 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 187 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.078 | 187 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 188 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 227 | 247 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEATFEFSSE LDRIKLHLLG ELSPMGMGGL FSNVTEVSTS ESQSNSSSSS SLSYRTSSLD 60 SNELSSDSSM AFEDLFGSNG FFDFTFPTYF PEFEVKPEII DLSTPKPLDS TNGYFEPEPK 120 PTVPKTLTES NRKPSLKISL PNKSTTEWIR FGNPDQPQPE PSVSAVPVPA AQNNNNSNSG 180 VEEKKRHYRG VRQRPWGKYA AEIRDPNRRG SRVWLGTFDT AIDAAKAYDR AAFKLRGSKA 240 ILNFPLEAGK PETTAATVVS INDKKRRRVE EEQVVEEVKV VVKKERVTEP VDAMSYLRDI 300 PLTPSSWTAV CDWDSDVKGI FNVPPLSPLS PHPQMGYPQL MVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-30 | 184 | 252 | 2 | 70 | ATERF1 |
3gcc_A | 1e-30 | 184 | 252 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 268 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924824.1 | 0.0 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 9e-64 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A2N9FTI7 | 1e-116 | A0A2N9FTI7_FAGSY; Uncharacterized protein | ||||
STRING | EMJ10513 | 2e-87 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-47 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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