PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TCP | ||||||||
Protein Properties | Length: 258aa MW: 27618 Da PI: 8.5305 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.3 | 3.3e-39 | 68 | 152 | 2 | 85 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+ augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1 68 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 124 789****************************************************** PP TCP 59 ikeltgtssssasec.eaesssssasns 85 i++ tgt++++as+ a++s+s++++s augustus_masked-scaffold01286-abinit-gene-0.4-mRNA-1 125 IIAHTGTGTIPASALaAAGASVSQQGTS 152 ************9996555555555432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-31 | 73 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.543 | 74 | 128 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDPKGSTAKQ PPQGVPNFLS LPQPQHHQQQ QQEQEQEQEP NMGENKPAEI KDFQIVIADK 60 EEGKKQLAPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ 120 AEPSIIAHTG TGTIPASALA AAGASVSQQG TSLSAGLHQK IDELGGSSIG SGSRTSWPMV 180 GANLGRPHVA SALWPPVTGF GFQSSSGPST TNLATESSNY LQKIGFSGFD LPPTNMGPMS 240 FTSILGGIVH SQIAWVLD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023923268.1 | 1e-141 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 5e-69 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2N9IAC0 | 1e-139 | A0A2N9IAC0_FAGSY; Uncharacterized protein | ||||
STRING | VIT_14s0068g01690.t01 | 1e-129 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-66 | TCP family protein |