PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 556aa    MW: 62551 Da    PI: 6.6134
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.32.4e-921865552374
                                                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsv 57 
                                                           ve Ll+++++++s++l+laq +L+rl+++ ++p g+p+qR+a+yf eA ++ l++  
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 186 VEELLRAVDCFDSNQLQLAQGILERLNQRhRAPVGKPLQRAAFYFREAFQSLLTN-- 240
                                                           678*************************999***********************9.. PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                            ++    +++ +s+++ +++++ +k+fs +sPi+ fsh+t+Nqa+lea++g++ +H+
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 241 -GT--NRTTRLSSWSEIVQTIKTYKAFSGISPIPLFSHFTTNQALLEAFQGSTFLHV 294
                                                           .33..345566667789**************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetg 162
                                                           +Dfdi+ G+Q++++++++++R+e+         +  lRiT+++++e   + e + ++
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 295 VDFDIGLGGQYASFMKEISERAESckatnnnipSVFLRITAIVPEE--YALESRLIK 349
                                                           **********************55555556653559********66..99999**** PP

                                                  GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                                                           e+L++fA+el+++++ ++++ +++e+l+++++++ +gE++a  l+  ++r l ++ +
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 350 ENLSQFAQELKIRLQVDLIHLRTFESLSFKAIKFMNGEKTAFLLSPTIFRRLGSTNN 406
                                                           ****************************************************55555 PP

                                                  GRAS 220 leserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak 274
                                                               + ++L+ ++++sP+vvv+v++e  ++ +s+sF + f+++le+y+ +++sl+a+
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 407 ----IAAFLNDLRTVSPNVVVLVDNEgwTESGSASFRRNFVNSLEFYALMLESLDAS 459
                                                           ....555*******************6566699************************ PP

                                                  GRAS 275 lpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                                           ++      ++ +k+E +ll+++i  +v ++g++       ++ W++ +  aG+kpv+
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 460 VGGGGvggDWVRKIEMVLLRPRILAAVEAAGRR-------VAPWKDVFYGAGMKPVQ 509
                                                           998888889**********************98.......89*************** PP

                                                  GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           ls++a  qa++ll kv+++g++v +++++lvl+W+drp+v++SaW+
  augustus_masked-scaffold01116-abinit-gene-0.6-mRNA-1 510 LSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWRDRPMVATSAWK 555
                                                           *********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.45159535IPR005202Transcription factor GRAS
PfamPF035148.4E-90186555IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MRVPANSPQT NNQSPNPKPV LSNNTSRNIG FHSPTNTPNS LCYEPTSVLD LRRSPSPVKE  60
KPASTTEIPG RLDVLSRPED PLDWDEQVLH NLDWDSIIRD IDLLHHEDPV PSLRTILQSN  120
PCDPHQVVQL PELPHPQPFD PTQFVHTDFI CDVNYSTQNL ADLHNSNPFD LTHEFHHTSL  180
NGFESVEELL RAVDCFDSNQ LQLAQGILER LNQRHRAPVG KPLQRAAFYF REAFQSLLTN  240
GTNRTTRLSS WSEIVQTIKT YKAFSGISPI PLFSHFTTNQ ALLEAFQGST FLHVVDFDIG  300
LGGQYASFMK EISERAESCK ATNNNIPSVF LRITAIVPEE YALESRLIKE NLSQFAQELK  360
IRLQVDLIHL RTFESLSFKA IKFMNGEKTA FLLSPTIFRR LGSTNNIAAF LNDLRTVSPN  420
VVVLVDNEGW TESGSASFRR NFVNSLEFYA LMLESLDASV GGGGVGGDWV RKIEMVLLRP  480
RILAAVEAAG RRVAPWKDVF YGAGMKPVQL SQFADFQAEC LLGKVQVRGF QVGKRHAELV  540
LCWRDRPMVA TSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2119155425378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904488.10.0scarecrow-like protein 15
RefseqXP_023927761.10.0scarecrow-like protein 15 isoform X1
RefseqXP_023927762.10.0scarecrow-like protein 15 isoform X2
SwissprotO232101e-156SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2N9EFC30.0A0A2N9EFC3_FAGSY; Uncharacterized protein
STRINGXP_004300613.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-151GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]