PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00750-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 420aa    MW: 46312 Da    PI: 7.3413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00750-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1778127255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  augustus_masked-scaffold00750-abinit-gene-0.1-mRNA-1  78 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 127
                                                           59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-2178135IPR016177DNA-binding domain
PfamPF008474.8E-1178127IPR001471AP2/ERF domain
PROSITE profilePS5103222.11578135IPR001471AP2/ERF domain
CDDcd000187.14E-3078134No hitNo description
Gene3DG3DSA:3.30.730.102.4E-2978134IPR001471AP2/ERF domain
SMARTSM003807.4E-3378141IPR001471AP2/ERF domain
PRINTSPR003672.5E-97990IPR001471AP2/ERF domain
PRINTSPR003672.5E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEEAFRRLNG LTHTSEPITD HQNHHNTKKC NTITTTTTTP PTTTSSTTTT TTNNSTTNTN  60
NKRTIRETNS SSGGTTMRYR GVRRRPWGRY AAEIRDPQSK ERRWLGTFDT AEEAACAYDC  120
AARAMRGLKA RTNFVYPTSP THHSATDHLL PPFNFAKQSQ PSGKTPPNHH RQFGSTWSSP  180
YGDFSGSLPQ RNGSLNMLLL CDLLSSSSSS NPSSLVSSMD QFPYFNGSSS SLLNPSANSN  240
ISDTFSNSSS MSFPVIDNNQ SHTTGGSNRA ITTQSLGESS EFFPKEPSDS GLLEEVIHGF  300
FPKPLSKKCD PPKTQTCTNF ETSPPLISDM SVAQSFEGMR RGIKNDHFGC SYDYQGIPLL  360
PQQFENFNGF KNETFSSQAA MPFGYEMPAV NLQVGPESML DDIFQYPELL NAFAARVQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2073134971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880094.10.0ethylene-responsive transcription factor ESR2-like
TrEMBLA0A2N9HYK80.0A0A2N9HYK8_FAGSY; Uncharacterized protein
STRINGEOY006421e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.15e-14ERF family protein