PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc04642.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 554aa MW: 59559.2 Da PI: 9.4468 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.6e-30 | 362 | 420 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh Zpz_sc04642.1.g00010.1.am.mk 362 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 420 799************************998****************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 350 | 422 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.65 | 356 | 422 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-25 | 360 | 422 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 361 | 421 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 363 | 419 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 554 aa Download sequence Send to blast |
MTARTYWQRL AVSAGPGGGA AVPREIILFG SMYWLWHLGG GPLQRAALST VQPAWSCGAR 60 AGDGARLAVW FRFGHGPCPC LFLFIGLVLL RGMTAHGWAA VLTKPSPTWA GFNSSQDFLP 120 ERQALRRSPR GRVEKSSLRP LPRQSINKQK SAPPLISISS PPSRLPQSQP LRVASRVFSG 180 SLSQMEEEHC SNSWDLDAVV RLACRRRRLS PPPVQVNDPF DSFPPTPSLP PQGPPGAPNP 240 ANEKEADAGW RFPDLRSGDG QDGDELLRAL MAARPPVPPS LPPPPLPTLP PLPPPPQQQQ 300 QQPVVVTPTA EVPVQARAGP ASARARAQPS GRQVPGTVQR SKRRKNQVKK VVSHVPADGS 360 SSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCAARKQVE RCRTDPNTFI LTYTGEHNHA 420 APTHRNSLAG TTRHKFPSAA SPPPPSVVVG SSESQQQQQP SPSAPSTSAG LSPTTPLRTP 480 SMEEEDDEEE DELLVEDMEM AGEDELLFLH GDVDSAVPLQ PMSSVFDVVD EPFLGSPWAS 540 TTAGSPAAGA AAGS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-20 | 345 | 423 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-20 | 345 | 423 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc04642.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061370 | 1e-158 | BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds. | |||
GenBank | EU973103 | 1e-158 | EU973103.1 Zea mays clone 393369 WRKY39v2 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. | |||
GenBank | HQ858719 | 1e-158 | HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130964.1 | 1e-126 | uncharacterized protein LOC100192069 | ||||
TrEMBL | A0A1D6QP27 | 1e-125 | A0A1D6QP27_MAIZE; WRKY transcription factor 22 | ||||
STRING | GRMZM2G038158_P01 | 1e-126 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-45 | WRKY family protein |