PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04197.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 483aa MW: 52693.3 Da PI: 8.517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04197.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	368	390	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Zpz_sc04197.1.g00050.1.am.mk 368 FMCRKCGKAFAVRGDWRTHEKNC 390 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.61E-6	352	388	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-6	354	388	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	368	388	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MGDSYTNFLR GYYSHFVPPS NPPPPASSSF SSYAASYLHP PPPSPPIREA LPLLNSLTPP 60 SATALTPHHR HDDDVQDQKG QCKLITTCSK STGGGQEAAD QAAEVTVALH IGLPSPSPSE 120 AAAMAAGSGE NQEPATAEAQ RSQQQDEGGG DEEEDQDDAV AVGCASIGIG RLTKGQYWIP 180 TPSQILIGPT QFPCPVCYKT FNRYNNMQCM HRSEACVDWS GSRIGSAAAG KVLRQYCYAC 240 KLRRPISLCL RDPRTACGSR RGTEACGRGK RPIDMGCRTL SSSYTEAFLE FALVLPFRFA 300 MHMWGHGSQY RKGPESLRGT QPTAMLRLPC YCCAAGCRNN IDHPRARPLK DFRTLQTHYR 360 RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HIRAFGRGHA 420 ACGIVCFDDL DDDDRDPSSE VDHTATPSTS TTGVVPPPVG ANARNIHRGT PSTSRGSGDR 480 RTL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MGDSYTNFLR GYYSHFVPPS NPPPPASSSF SSYAASYLHP PPPSPPIREA LPLLNSLTPP  60
SATALTPHHR HDDDVQDQKG QCKLITTCSK STGGGQEAAD QAAEVTVALH IGLPSPSPSE  120
AAAMAAGSGE NQEPATAEAQ RSQQQDEGGG DEEEDQDDAV AVGCASIGIG RLTKGQYWIP  180
TPSQILIGPT QFPCPVCYKT FNRYNNMQCM HRSEACVDWS GSRIGSAAAG KVLRQYCYAC  240
KLRRPISLCL RDPRTACGSR RGTEACGRGK RPIDMGCRTL SSSYTEAFLE FALVLPFRFA  300
MHMWGHGSQY RKGPESLRGT QPTAMLRLPC YCCAAGCRNN IDHPRARPLK DFRTLQTHYR  360
RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HIRAFGRGHA  420
ACGIVCFDDL DDDDRDPSSE VDHTATPSTS TTGVVPPPVG ANARNIHRGT PSTSRGSGDR  480
RTL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04197.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243261	0.0	AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227506.1	1e-94	zinc finger protein WIP2
Swissprot	Q9SVY1	5e-84	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M7ZPJ6	3e-97	M7ZPJ6_TRIUA; Protein TRANSPARENT TESTA 1
STRING	TRIUR3_23735-P1	5e-98	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	2e-83	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]