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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04052.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 119aa MW: 14002.1 Da PI: 7.7215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.8 | 4.6e-15 | 59 | 107 | 2 | 49 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49 ppGfrF Pt+eel+ +yL+++++g + ++e++i+ vdiy+++P+dL+ + Zpz_sc04052.1.g00020.1.am.mk 59 PPGFRFYPTEEELLGFYLRHRLAGMRPDVERFIPVVDIYSYHPRDLQcN 107 9****************************999**************843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-15 | 56 | 106 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.184 | 58 | 119 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-7 | 59 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MDAPTSAMAV QRMQLLQNFF TLLWELLSRH QHHRPLYKYV QGMRLNMETT GGGVDPIFPP 60 GFRFYPTEEE LLGFYLRHRL AGMRPDVERF IPVVDIYSYH PRDLQCNQLD LQASNRSMS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04052.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC112209 | 1e-40 | AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence. | |||
GenBank | AK106277 | 1e-40 | AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence. | |||
GenBank | AK109939 | 1e-40 | AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence. | |||
GenBank | AP014967 | 1e-40 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-40 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6PK97 | 4e-25 | A0A3L6PK97_PANMI; NAC domain-containing protein 90-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 9e-12 | NAC domain containing protein 71 |