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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03682.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 548aa MW: 58616.6 Da PI: 7.938 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 367 | 389 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ Zpz_sc03682.1.g00030.1.am.mk 367 FMCRKCSKAFAVRGDWRTHEKNC 389 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.88E-6 | 351 | 387 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 353 | 387 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MGDRYTNFLR GYYPHFAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP 60 PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEATA DQAEEVTVAL HIGLPSPSPS 120 ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP 180 TPSQILIGPT HVCCGVDLGG GSAAAAAAVA VRVCLQASIA NLISLSRSLC DPVYGVHHFF 240 DLIEPSRSRG TEACSNGGRG ERPLTWGRTL YSYGGLPHTT HPTTSSGLQS AQSIRSDPSM 300 HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYRR 360 KHGIKPFMCR KCSKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRAFGRGHAA 420 CGIDCFDDLD DDDRDPSSEV DHAATTSAST ATVVAAVVGA NARNNHAPWD AIDVERLRQP 480 KDIIGNEAAS VLGAAEEHCR SSIYAGARGA RRPATRSLLH VRSLAGCRVG LVTGAGMSRG 540 QPAFPATG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03682.1.g00030.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243261 | 0.0 | AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227506.1 | 1e-96 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 7e-85 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | I1GXB8 | 2e-95 | I1GXB8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G36067.1 | 4e-96 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15363 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-81 | C2H2 family protein |
Publications ? help Back to Top | |||
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