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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02943.1.g00100.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 151aa MW: 17313 Da PI: 9.9683 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr+gi KKA E+ vLCda+v ++ifss gkly+y++ Zpz_sc02943.1.g00100.1.am.mk 9 KRIENATNRQVTFSKRRAGIVKKAREIGVLCDADVGIVIFSSAGKLYDYCT 59 79***********************************************96 PP | |||||||
2 | K-box | 51.7 | 3.7e-18 | 71 | 145 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR......hllGedLesLslkeLqqLeqqLekslkkiRskK 69 yq++sgk l+++k++sl+ e++++kke++n+q e+R hl+GedL+sL+ +eL +e++L+++ ++ R+k+ Zpz_sc02943.1.g00100.1.am.mk 71 YQTNSGKILWDEKHKSLSAEIERVKKENDNMQIELRlvltvqHLKGEDLNSLQPRELIAIEEALQNGQTNLREKQ 145 89999999************************5554444444*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-32 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.30E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-8 | 82 | 146 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.401 | 84 | 151 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT FSKRRAGIVK KAREIGVLCD ADVGIVIFSS AGKLYDYCTP 60 RTTLSRILEK YQTNSGKILW DEKHKSLSAE IERVKKENDN MQIELRLVLT VQHLKGEDLN 120 SLQPRELIAI EEALQNGQTN LREKQAIIHW L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02943.1.g00100.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064585 | 1e-117 | BT064585.1 Zea mays full-length cDNA clone ZM_BFc0186B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962034.1 | 3e-91 | MADS-box transcription factor 4 | ||||
Swissprot | Q40703 | 3e-86 | MADS4_ORYSJ; MADS-box transcription factor 4 | ||||
TrEMBL | A0A1E5VSA3 | 3e-92 | A0A1E5VSA3_9POAL; MADS-box transcription factor 4 | ||||
STRING | Si023214m | 1e-90 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-58 | MIKC_MADS family protein |