PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02860.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 349aa MW: 38687.2 Da PI: 7.2939

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02860.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.2	2.5e-19	40	109	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt e+++Liea+r+++e+ g + ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e + Zpz_sc02860.1.g00040.1.am.mk 40 WTLPETMQLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYEMAG 109 ****************************************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.909	32	96	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.7E-5	34	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-6	35	98	IPR009057	Homeodomain-like
Pfam	PF13837	8.4E-13	38	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEAMGGFSGV PHSQQGSDQE ARNGALPLIT ASRAYRRGNW TLPETMQLIE AKRKVHEERH 60 PGDQGLARWR WVEDYCWRAG CRRSQNQCND RWDNLMRDYK KVRAYEMAGR APSYWAMGRA 120 ERKEKGLPSN LLREVYDAMT EVVERKKMST GCSGGAGGMY LGPSSSFLDI PLQASPLAQV 180 LPPAMPQPLG PLEQVTRGQG VPQFSSESPE RKRRRSSLDE QLPESGTPDP GTRFHHQEHE 240 HPRDRIEDDR CDGSSDGDSD DEEAVLSGAI GRCAAILSEA LENREAAEER RHREVMAVEE 300 RRGRELQARR KAGEQSVAEL AAAVNQLSGS MLALAGAKHK GGHGPAAPK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEAMGGFSGV PHSQQGSDQE ARNGALPLIT ASRAYRRGNW TLPETMQLIE AKRKVHEERH  60
PGDQGLARWR WVEDYCWRAG CRRSQNQCND RWDNLMRDYK KVRAYEMAGR APSYWAMGRA  120
ERKEKGLPSN LLREVYDAMT EVVERKKMST GCSGGAGGMY LGPSSSFLDI PLQASPLAQV  180
LPPAMPQPLG PLEQVTRGQG VPQFSSESPE RKRRRSSLDE QLPESGTPDP GTRFHHQEHE  240
HPRDRIEDDR CDGSSDGDSD DEEAVLSGAI GRCAAILSEA LENREAAEER RHREVMAVEE  300
RRGRELQARR KAGEQSVAEL AAAVNQLSGS MLALAGAKHK GGHGPAAPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	214	RKRRR
2	210	215	RKRRRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02860.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083602	1e-88	BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.
GenBank	EU962106	1e-88	EU962106.1 Zea mays clone 240234 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792444.1	1e-145	uncharacterized protein LOC112873645
TrEMBL	A0A3L6SE93	1e-145	A0A3L6SE93_PANMI; Uncharacterized protein
STRING	Pavir.J22454.1.p	1e-139	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	2e-41	Trihelix family protein