PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02469.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 611aa    MW: 66678.9 Da    PI: 9.6114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02469.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.91.7e-20257334279
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                   Wt qe+++Liea+r+++e+   g++  ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e+   +++ s +
  Zpz_sc02469.1.g00010.1.am.mk 257 WTLQETMLLIEAKRKVHEERHPGEQGLARWRWVEDYCWRAGCQRSQNQCNDRWDNLMRDYKKVRAYERAAGDGAPSYW 334
                                   *****************************************************************9998766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.269249313IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-6250315IPR009057Homeodomain-like
SuperFamilySSF466898.97E-7252315IPR009057Homeodomain-like
PfamPF138371.7E-14255336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
LIVPKLISAT LKNDGHSQET SYRLRPLEQG PLQQVPPGAS RELLLHLLQA AFRVPEPLRN  60
AHGQNENQST HANLQRKKVR LSCGAHTGEL PLVAMARGSG GCCRLGGWVY GAATAEQVAV  120
GDRPVGRGGA RSDRWKPPPL PGKASAPLEA TTRVAPTMGP RMPVKLFLSP TPAWLVGLRR  180
LAGGLSVWVA FFPQQPPCDA SDVSQDQQQA SSLHSKSEAM EPMGGGGSDV LHGQKGGEEA  240
SRNGAPTASR DYRRGNWTLQ ETMLLIEAKR KVHEERHPGE QGLARWRWVE DYCWRAGCQR  300
SQNQCNDRWD NLMRDYKKVR AYERAAGDGA PSYWAMGRAE RKGSGLPSNL LREIYDGMTE  360
VVERKMSRTG SSGVAGGAFL AASSSGLSNV PMQASQLAQV VPRPLPHQPL GHGVPHYRSF  420
ESPERKKRRP SLESLDERPP ESITPASGPH FHHQAEHERR GREDDRSDES SDEEEEVLGG  480
AIGRCAAILS EALDSREAAE ERRHRELMVA EERRGRAVQA RREAGEQSVA ELAAAVNQLA  540
GSMLALADAK HKGPAAPKGW AGRLPNDDAA MRAASAHAAD HRVSVDQIEI TLRRYACSSH  600
LVARGRQRRV G
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02469.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9621061e-100EU962106.1 Zea mays clone 240234 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.11e-130uncharacterized protein LOC112873645
TrEMBLA0A2T7C2T11e-132A0A2T7C2T1_9POAL; Uncharacterized protein
STRINGPavir.J22454.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.16e-40Trihelix family protein