PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01822.1.g00090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 414aa MW: 45017.7 Da PI: 7.5766 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.8e-14 | 237 | 282 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ L+++lP+ K +K +iL +A eYI+sL+ Zpz_sc01822.1.g00090.1.sm.mk 237 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 282 8899********************95.....4999**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-13 | 234 | 282 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-16 | 234 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 236 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 237 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MDSSWFHGYA TANAAGNNGF MCGYAASCTP AELQHKEVEE EEMLISSQIQ HHLNQISMHM 60 NMDDEVVYDG VLDIQEHPTM VDDLLDPNHA TSFPSSSSSS SLSLRSGSFS CSPNSSAQVF 120 GAPAPAASGH YPEVSSHVPL PPAAPYTNVH VSTAPLAATP PAAGKQASAF KSYAQHLGPR 180 RQPTKPGACG QKMFKTAMSV LSRMHMAASA RYNQQYYYQQ ASAEAVATPP SVNQLQHMIS 240 ERKRREKLND SFQALKTVLP PGSKKDKTSI LIRAREYIRS LESKASELEE KNKSLESRLT 300 GHRGSQAGAD DADADKKVQI EITRAAKECW AVEPRDLCTL KIVVRSRCNM TDVVLRTLQC 360 LKDQAGDDVN LVSMNTSGSS AGPPQTSSSP RAVLTMQIKA RDTCYVLARQ MIDV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 245 | ERKRRE |
2 | 241 | 246 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01822.1.g00090.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971740.1 | 1e-128 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A3L6R5J5 | 1e-133 | A0A3L6R5J5_PANMI; Uncharacterized protein | ||||
STRING | Si001328m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-20 | bHLH family protein |