PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01479.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 32390.1 Da    PI: 8.9292
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01479.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-2895145151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k ien++nrqvtfskRrng+lKKA E+SvLCdaev v++fss gkly+++s
  Zpz_sc01479.1.g00080.1.am.mk  95 KLIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGVVVFSSAGKLYDFCS 145
                                   569**********************************************96 PP
2K-box59.81.1e-20172240169
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                   yq++sgk l+++k++ l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  + ++L+++l++  +k 
  Zpz_sc01479.1.g00080.1.am.mk 172 YQTNSGKILWDEKHKILSAEIDRVKKENDNMQIELRHLKGEDLNSLQPKELIMIDEALDNGLTNLNDKL 240
                                   79999999*******************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.90387147IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-4187146IPR002100Transcription factor, MADS-box
CDDcd002652.74E-4088181No hitNo description
SuperFamilySSF554552.62E-2988196IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-2889109IPR002100Transcription factor, MADS-box
PROSITE patternPS00350089143IPR002100Transcription factor, MADS-box
PfamPF003191.5E-2597143IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28109124IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28124145IPR002100Transcription factor, MADS-box
PfamPF014862.5E-11183239IPR002487Transcription factor, K-box
PROSITE profilePS5129710.032185286IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTKYIAFAIN SHVGQGDPKA PSSAFLFPPW RSPLLLAHLH HPSLPTPLHR HHQPSRSSKS  60
GLHSEKGRRE EANHLSCWER ACCARRMGRG KTEIKLIENS TNRQVTFSKR RNGLLKKARE  120
ISVLCDAEVG VVVFSSAGKL YDFCSPKTSC VPCRACSAPF VLPLLSKILE KYQTNSGKIL  180
WDEKHKILSA EIDRVKKEND NMQIELRHLK GEDLNSLQPK ELIMIDEALD NGLTNLNDKL  240
RQQDIALSGS MRDLELGYHA DRDFEAQMPI TFRVQQPSHP NLQEDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1487145159Myocyte-specific enhancer factor 2B
1tqe_Q1e-1487145159Myocyte-specific enhancer factor 2B
1tqe_R1e-1487145159Myocyte-specific enhancer factor 2B
1tqe_S1e-1487145159Myocyte-specific enhancer factor 2B
3mu6_A1e-1488145158Myocyte-specific enhancer factor 2A
3mu6_B1e-1488145158Myocyte-specific enhancer factor 2A
3mu6_C1e-1488145158Myocyte-specific enhancer factor 2A
3mu6_D1e-1488145158Myocyte-specific enhancer factor 2A
6c9l_A1e-1487145159Myocyte-specific enhancer factor 2B
6c9l_B1e-1487145159Myocyte-specific enhancer factor 2B
6c9l_C1e-1487145159Myocyte-specific enhancer factor 2B
6c9l_D1e-1487145159Myocyte-specific enhancer factor 2B
6c9l_E1e-1487145159Myocyte-specific enhancer factor 2B
6c9l_F1e-1487145159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01479.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7403112e-78KU740311.1 Eriachne aristidea PISTILLATA-like MADS-box transcription factor PI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816957.11e-110MADS-box transcription factor 2
SwissprotQ407021e-109MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A2T7DDM51e-111A0A2T7DDM5_9POAL; Uncharacterized protein
STRINGSi002929m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]