PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01031.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 192aa    MW: 21149.3 Da    PI: 9.2883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01031.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33101159159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+
  Zpz_sc01031.1.g00010.1.sm.mkhc 101 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGTHTHP 159
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3486159IPR003657WRKY domain
SuperFamilySSF1182904.32E-3093160IPR003657WRKY domain
PROSITE profilePS5081130.07996161IPR003657WRKY domain
SMARTSM007741.0E-39101160IPR003657WRKY domain
PfamPF031062.1E-27102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MESNYHPMLF ATQPSSSTSN SYPFMAGTSG QDVRDCRGSF LGEPSNSKDG VGPPELGEAS  60
AGGAGEADRS TGGVNLGKKK GEKKERRPRY AFQTRSQVDI LDDGYRWRKY GQKAVKNNNF  120
PRSYYRCTHQ GCNVKKQVQR LSKDEGVVVT TYEGTHTHPI EKSNDNFEHI LTQMQIYSGI  180
GGSGFSSSSM FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2792160876Probable WRKY transcription factor 4
2lex_A3e-2792160876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01031.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683631e-104EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979296.12e-87probable WRKY transcription factor 75
RefseqXP_025826644.19e-87probable WRKY transcription factor 12 isoform X1
RefseqXP_025826645.12e-87probable WRKY transcription factor 75 isoform X2
TrEMBLA0A3B6APP72e-86A0A3B6APP7_WHEAT; Uncharacterized protein
STRINGSi026859m6e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-56WRKY DNA-binding protein 75