PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00957.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 334aa MW: 36854.4 Da PI: 7.9576 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.1 | 1.8e-26 | 45 | 114 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W k+e+l+Li++rrem+ +++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + +++ Zpz_sc00957.1.g00070.1.sm.mk 45 WVKEETLCLIALRREMDAHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSYARSS 114 **************************************************************99887764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.525 | 37 | 101 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-5 | 38 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.95E-5 | 41 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-6 | 41 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.57E-27 | 43 | 108 | No hit | No description |
Pfam | PF13837 | 2.1E-18 | 44 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLLSGPPPAS TPPLLLPESS GEDGGGHDSS SRAAGSAPKK RAETWVKEET LCLIALRREM 60 DAHFNTSKSN KHLWEAISAR MREQGFDRSP TMCTDKWRNL LKEFKKARSY ARSSAGGAGG 120 NGNAKMAYYK EIEDLLKRRG KAGGSGGGSC GGGAGKSPTS NPKIDSFLQF PTDKGFEDPN 180 IPFGPVEGGD NQVTLGGRVI LVKWGDYTKR IGIDGTAEAI KEAIKSAFGL RTRRAFWLED 240 EDEVVRTLDR DMPIGTYTLH LDNGITIKLC AFEDAERMTV RTEDKTFYTE EDFRDFLTRR 300 HWSLLREYGG YRIADTLDDL RPGAIYQGVR SLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-39 | 39 | 131 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00957.1.g00070.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195254.1 | 0.0 | trihelix transcription factor GT-4-like | ||||
Swissprot | Q9FX53 | 1e-118 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A3B6B0T6 | 0.0 | A0A3B6B0T6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L7H1 | 0.0 | A0A446L7H1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_73E4240F0.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.2 | 1e-113 | Trihelix family protein |
Publications ? help Back to Top | |||
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