PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000164819
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 373aa    MW: 42985.3 Da    PI: 6.3882
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000164819genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix881.1e-2769150286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y++++e
  MDP0000164819  69 WVQDETRSLIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 150
                    ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.57161125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-462127IPR009057Homeodomain-like
SMARTSM007173.6E-565127IPR001005SANT/Myb domain
CDDcd122034.75E-3067132No hitNo description
PfamPF138371.1E-2168152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MYSEKPQPID FYKEEGSRDM MMEVVVSNEL SQSQSQAHLH QPPPQQMLMG DSSGEDHEVR  60
APKKRAETWV QDETRSLIAL RREMDSLFNT SKSNKHLWEQ ISAKMREKGF DRSPTMCTDK  120
WRNLLKEFKK AKHHDRGSGS AKMSYYKEIE EILKERSKNP QHKSPTLPKV DSFVQFSDKG  180
IEDASISFAP VEASGRPTLN LERRLDHDGH PLAITAADAV TPGGVPPWNW RETPGNAYGG  240
RVILVTWGDY TRRIGIDGTA DAIKDAIKSA FRLRTKRSFW LEDEDQIVRS LDRDMPLGNY  300
TLHLDEGVAI KVCLYDESDH IPVHTEEKLF YTEEDYREFL SRRGWSCLRE FDGYRNIENM  360
DELRPGAIYR GVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-5163148186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130980.0bud| flower| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946722.10.0trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A498ICG50.0A0A498ICG5_MALDO; Uncharacterized protein
STRINGXP_008389795.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]