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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00481.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28830.6 Da PI: 8.4648 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 6.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaeva i+fs++gkl+ey++ Zpz_sc00481.1.g00070.1.sm.mk 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPRGKLHEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 77.4 | 3.8e-26 | 84 | 171 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 +++ + ++++e++ Lk++ie++q+ ++hl+GedLesL+lkeLqqLeqqL +slk+iRs+K++ l e+ + lqk e q++ Zpz_sc00481.1.g00070.1.sm.mk 84 DSESEGNWCHEYRILKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLGSSLKHIRSRKERSLQEENKALQKELVERQKT 164 5566789*****************************************************************988887777 PP K-box 91 nkaLrkk 97 ++ +++ Zpz_sc00481.1.g00070.1.sm.mk 165 VQQQKQQ 171 6665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.81E-43 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 4.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-19 | 86 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.771 | 88 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAAIVFSP RGKLHEYATD 60 SRMDEILDRY ERYSYAEKAL ISGDSESEGN WCHEYRILKA KIETIQKCHK HLMGEDLESL 120 NLKELQQLEQ QLGSSLKHIR SRKERSLQEE NKALQKELVE RQKTVQQQKQ QQEPWDQQPQ 180 PPAQDQTSSS SSSFLMRQDQ QALAPPSNIY PPVTMGGSSE EVATAVAPHD QAQAQAPPRV 240 AGLLPWMLSH LNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00481.1.g00070.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959885 | 1e-158 | EU959885.1 Zea mays clone 220235 mRNA sequence. | |||
GenBank | EU963061 | 1e-158 | EU963061.1 Zea mays clone 257029 MADS-box transcription factor 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105333.2 | 1e-116 | zea apetala homolog 1 | ||||
Swissprot | Q6Q9I2 | 1e-111 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | B6TDJ6 | 1e-122 | B6TDJ6_MAIZE; MADS-box transcription factor 15 | ||||
STRING | OB07G10630.1 | 1e-113 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-59 | MIKC_MADS family protein |