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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00478.1.g00120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 250aa MW: 26298.7 Da PI: 10.3672 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 68.6 | 1.3e-21 | 175 | 236 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEES.SSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.eng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 F+ k+ye++ d++++ ++sw +g n+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+Y Zpz_sc00478.1.g00120.1.am.mk 175 FVAKTYEMVADPATDAVVSWGgPDGagNTFVVWDPRELAASLLPRFFKHANFASFVRQLNIY 236 9*******************9855445*********************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.5E-14 | 171 | 242 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-18 | 171 | 237 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.7E-22 | 172 | 241 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-17 | 175 | 236 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-11 | 175 | 198 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-11 | 216 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-11 | 229 | 241 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MYVLNYARDS REFAVRDAAG AGPQDASPLL APPGAPRWRS YLEQRGRGAR TTWTPALFAA 60 TAPGTYSMLA QESVGVHRIS RIPLATAGAR GVSSRHVSQL GPSSSVLAYM GREFCAKHAE 120 RPRQQQPAAP VHTTPAQAPA AQGKQSAMAP LVVKPEPLAA AGAPRPVDGA PPAPFVAKTY 180 EMVADPATDA VVSWGGPDGA GNTFVVWDPR ELAASLLPRF FKHANFASFV RQLNIYVSTN 240 SPASSSASAN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00478.1.g00120.1.am.mk |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP44078 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-25 | heat shock transcription factor A2 |