PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00466.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 368aa    MW: 39654.1 Da    PI: 6.4066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00466.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29176234259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver++++p++++ tY+geHnh 
  Zpz_sc00466.1.g00140.1.sm.mkhc 176 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTEPNTFILTYTGEHNHA 234
                                     799************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-30163236IPR003657WRKY domain
PROSITE profilePS5081132.076170236IPR003657WRKY domain
SuperFamilySSF1182901.83E-25174236IPR003657WRKY domain
SMARTSM007741.4E-35175235IPR003657WRKY domain
PfamPF031067.6E-25177233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEEHCSNSW DLYAVVRQAC RRRRRLSPPP VQVNDPFDSF PPTPSLPPQG PPGAPNPANE  60
KEVDAGWRFP DLRSGDGQDG DELLRALMAA RPPVPPSLPP PPLSTLPPLP QQQQQQPVVV  120
TPTAEVPVQA RAGPASARAR AQPSGRQVPR AVQRSKRRKN QVKKVVSHVP ADGSSSDLWA  180
WRKYGQKPIK GSPYPRGYYR CSSSKGCAAR KQVERCRTEP NTFILTYTGE HNHAAPTHRN  240
SLAGTTRHKF PSAASPPPPS VVVGSSESQQ QQQPSPSAPS TSAGLSPTTP LRTPSMEEED  300
DEEEDELLVE DMEMAGEDEL LFLHGDVDSA VPLQPMSSVF DVVDETFLGS PWASTTAGSP  360
AAGAAAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-20159237280Disease resistance protein RRS1
5w3x_D7e-20159237280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00466.1.g00140.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613701e-156BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587191e-156HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.11e-126uncharacterized protein LOC100192069
TrEMBLA0A1D6QP271e-125A0A1D6QP27_MAIZE; WRKY transcription factor 22
STRINGGRMZM2G038158_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-46WRKY family protein