PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00227.1.g00350.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 865aa    MW: 95149.2 Da    PI: 8.9884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00227.1.g00350.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05307326120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++Cp C k+F+r  n++ H+
  Zpz_sc00227.1.g00350.1.am.mk 307 FSCPVCFKTFNRYNNMQMHM 326
                                   89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64307334IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5307326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
SuperFamilySSF576678.71E-6373411No hitNo description
Gene3DG3DSA:3.30.160.609.5E-5378411IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MFICCEEPPS PTRRGGGVVG RPPPPSSPQA GRLQLASVTC RWDRWGLGGT CRHSCPSPRA  60
LAHPPRVNHA SYNHDHRGVQ LLAAAMENPY TSFFQNHHRY HLRYYYYHPA TQPARAPAPP  120
AGAAYSLQFF PTPPAVPTAP YAPPSPPLRE ALPLLSLAPA SREEEPRNSL AEADSEEDEE  180
EEDAGPASIS SHGQQRVGGL VADLNAKAAG DPMDVESGAG SAAGDVTVAL RIGLPTTSAG  240
LADLVLALSS RQQADGVEES GVGGEEEEEE DVATAPLGFP STPIGRLNKG QYWIPTPSQI  300
LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCAPGC  360
RNNIDHPRAK PLKDFRTLQT HYKRKHGLKP FLCRRCGKAF AVKGDWRTHE KNCGRLWYCL  420
CGSEFKHKRS LKDHARAFGH GHGAVGGAGI DEDDDGAVSD VEHEGGGATA AANKQLILRQ  480
DNDDSVHRWR DGSAGHRRPA DSRQIDLHAR LIAPRDPTNC TVTTRQKGFR SMMAITLCSH  540
VDRSRGVAFL ALMAAGPPNR AHKPRPRHAW ASPDWRRPRP LLFYHPGQPE VILRLSVNAM  600
ASSLLTPPRP YYFSLPSVPK RLLTVPPRRR VTAARWPVRE RIGAAAEGSA SAPVATEEHK  660
ESKRCLRCGG MYLDEENHPN ACAFHGHVTG IFSSLTGNGE KGLFSLSPPH QGIDGEWSDK  720
SGVIVYRWND QGSRPNTGRD NWKKRWSCCQ EREEQAPPCR RGWHHRPSPQ SRQFVIPGTT  780
GGTPNPSMSE DCSSTRTAYV FSRERASAYP DHPPAMRLSV PDWAPRLVDS AVKRPRFSLF  840
TPSHSWDAVA MPCTGRDRKK PEPCG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00227.1.g00350.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696610.0EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-102C2H2 family protein