PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00171.1.g00670.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15664.9 Da    PI: 9.8103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00171.1.g00670.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.6e-29959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s
  Zpz_sc00171.1.g00670.1.sm.mk  9 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 59
                                  79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-33281IPR002100Transcription factor, MADS-box
CDDcd002659.32E-44276No hitNo description
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGFLK KAREISVLCD AEVGVVIFSS AGKLYDFCSP  60
KTSLSRILEK YQTNSGKNKM LEDENKLLAF KLHQQDIALS GSMRDLELGY HADRDFEAQM  120
PITFRVQPSH PNLQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-20171169Myocyte-specific enhancer factor 2B
1tqe_Q5e-20171169Myocyte-specific enhancer factor 2B
1tqe_R5e-20171169Myocyte-specific enhancer factor 2B
1tqe_S5e-20171169Myocyte-specific enhancer factor 2B
6c9l_A5e-20171169Myocyte-specific enhancer factor 2B
6c9l_B5e-20171169Myocyte-specific enhancer factor 2B
6c9l_C5e-20171169Myocyte-specific enhancer factor 2B
6c9l_D5e-20171169Myocyte-specific enhancer factor 2B
6c9l_E5e-20171169Myocyte-specific enhancer factor 2B
6c9l_F5e-20171169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00171.1.g00670.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929595e-86AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648495e-86BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970811.12e-47MADS-box transcription factor 2
RefseqXP_025816957.12e-47MADS-box transcription factor 2
SwissprotQ407028e-48MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A1E5V0L96e-79A0A1E5V0L9_9POAL; MADS-box transcription factor 2
STRINGPavir.Ea03625.1.p5e-47(Panicum virgatum)
STRINGPavir.J19259.1.p5e-47(Panicum virgatum)
STRINGSi002929m6e-47(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-33MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]