PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00132.1.g00440.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 1059aa    MW: 115309 Da    PI: 9.6635
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00132.1.g00440.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016564583120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++Cp C k+F+r  n++ H+
  Zpz_sc00132.1.g00440.1.am.mk 564 FPCPVCFKTFNRYNNMQLHM 583
                                   89*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-5564583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.349564591IPR007087Zinc finger, C2H2
PROSITE patternPS000280566586IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-5631668No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4635668IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538648668IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    Send to blast
MSGFLPDVRT FGSDSAPSMP RRERMRSHLA SIDVLLQRFL AHRELGEAID VQFSISTHRP  60
RGGEEVTSPS QVKLAKRRYE RSIDHGILLA GTLTSEIRLL QRHTSIQECS SLRLWSSCAD  120
DSSPDQIHCV TARAERGPAC FDGKRGAQPG SRTARNLLET DRFHRSDGAP DRGTHLIAVL  180
DRAARDVALH RCHHLGTVAP DAGSSFLIPS LSREPSPCPA SFPLNGAAST QRASEQSRAH  240
TPQPSSRSGS VNAEVAHVSS RAPSSSSRAE GVPVGGALTS AMVAAVSLPC LVLLLVLGEA  300
GLRVAALATA AAGVEALKLL LPQTQRAQAQ QLHAMENPYT SFFQNHHRRY YYHPATQPGQ  360
PAPAPAPPAA AYSLQFFPTP PTTVPTAAPY SPPSPPLREA LPLLSLAPAS RDEDRRGSRR  420
TEADSDEDDG EEAAGPTSIS NQGQQRVGGL FTDLNAKAAS DPMDVESGAG SAAGDVTVAL  480
RIGLPTTSAG LGLDLDDVVE EVEDNDGNCE GRNDRENGAS REGEEEAAAA PLGLGFPSTP  540
IGRLNKGQYW IPTPSQILIG PTQFPCPVCF KTFNRYNNMQ LHMWGHGSQY RKGPESLRGI  600
QPTAMLRLPC YCCAPGCRNN IDHPRAKPLM DFRTLQTHYQ RRHGLKPFLC RRCGKAFAVK  660
GDWRTHEKNC GRLWYCLCGS EFKHKRSLKD HARAFGHGHG AIGGGGIDED DDGAVSDRSV  720
QGKARPILRG EGSVLAAVTA PPPQQGIDGE WRDKSGLIVY RMNGQGRRPT TGRDNWKNWW  780
SCCQERKEQA PPCRRGCTTL RAFKVLSPSP FLSSLVAVAA RPRRPRRTRP SPPISRAMVI  840
SYTEEHVYRH PWHRVTAAAW RKFTDPAARA AVLSHILDVQ TLSRDLRAPP GAATLFRQET  900
SIRCAPLAAV AAKVAELVER RCAERFAQNA ANGRYKTGNG RDVMERICDV IDSLRPRYRE  960
GLASCGCVRL LPSLGKAASP FSLSRRLFSG ERGRASAYPD RQSAPAGSLG RGRRARDRKE  1020
TAGNGAARVS HVHTRIGAES QQFSTLAIVW EYYRYKDCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110121019RRARDRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00132.1.g00440.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696610.0EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-102C2H2 family protein