PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00037.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 331aa    MW: 34218.1 Da    PI: 8.3671
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00037.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-0661103542
                      zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                    C+ ++   +  +C  +   lC  C  + H+       H++vpl
  Zpz_sc00037.1.g00100.1.am.mk  61 PCAVCGGA-AAVYCAADTAALCGPCDAAVHSAnplasrHERVPL 103
                                   6******9.*********************66999999999986 PP
2CCT67.44e-23238281144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Zpz_sc00037.1.g00100.1.am.mk 238 REARVQRYREKRKKRKFQKTIRYASRKAYAEARPRIKGRFVKRA 281
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.8E-1357103IPR000315B-box-type zinc finger
CDDcd000219.00E-761103No hitNo description
PROSITE profilePS501199.22962103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.579238280IPR010402CCT domain
PfamPF062032.1E-17238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPSSPFLFMQ LSSSVRSPTP THDEHLENQK KQSIRSRLTP RRRKSKAMGS EGSTSPGAGA  60
PCAVCGGAAA VYCAADTAAL CGPCDAAVHS ANPLASRHER VPLAAAAAAV AAASGAYDNL  120
FAADDVDAAS SWSLPPASGQ QGQGSPQGSS ETSFATSDSG ADGRSLFDLL SDVDLAACVT  180
GDAAGHLPYG VAPTHHHVAP FWAPPGLAAW TPAWSPAADA ATVVVPAATA VVAAAAEREA  240
RVQRYREKRK KRKFQKTIRY ASRKAYAEAR PRIKGRFVKR APGTAAAALD NGAVDAGGDE  300
AKFWLSFSDD ARDDGVGFYM DAGAYGVVPS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943PRRRK
24045RRRKSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00037.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.11e-100zinc finger protein CONSTANS-LIKE 1
TrEMBLK3YJ055e-99K3YJ05_SETIT; Uncharacterized protein
STRINGSi014224m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-15CONSTANS-like 5