PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00018.1.g00310.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 312aa MW: 34170 Da PI: 10.056

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00018.1.g00310.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.2	2.8e-25	174	223	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k+ rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyey+s Zpz_sc00018.1.g00310.1.am.mk 174 RIEDKTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPGGKLYEYAS 223 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.427	165	225	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-32	165	224	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.01E-34	166	226	No hit	No description
SuperFamily	SSF55455	9.55E-25	167	225	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-26	167	187	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-24	174	221	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-26	187	202	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-26	202	223	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSASLSEHVT TDLRTSSDSE IFTRPATASV GAGVVSMDRA VLGGSSSPPS VCRPAVHVLR 60 RTSDLPYTYY DARAACLRRV QLLRFLRFAS CRSAEEASEL VDQKEEPLDS WSGAKINCTR 120 ERRFIGGLEV GPRSAVTLVS SSSPRPHHPR RRGSHAATHP GEAMARRGPV ELRRIEDKTS 180 RQVRFSKRRA GLFKKAFELA LLCDAEVALL VFSPGGKLYE YASTRFAPSP LPPPPSRLAA 240 TAAADQPPCA CAPCARDYPK YMRVVFPAPL AFPWSGAERL FRLATSTCLN TCDVLYVSST 300 DKGGIWRERA RS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-15	167	224	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-15	167	224	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-15	167	224	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-15	167	224	2	59	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3kov_B	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3kov_I	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3kov_J	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3mu6_A	2e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3mu6_B	2e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3mu6_C	2e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3mu6_D	2e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_A	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_B	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_C	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_D	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_I	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
3p57_J	3e-15	167	224	2	59	Myocyte-specific enhancer factor 2A
6bz1_A	3e-15	167	224	3	60	MEF2 CHIMERA
6bz1_B	3e-15	167	224	3	60	MEF2 CHIMERA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00018.1.g00310.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184819	2e-66	KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP43967	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-23	AGAMOUS-like 20