PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00010.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 312aa    MW: 32795.8 Da    PI: 8.1624
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00010.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.89e-39811811100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkCa+dC++ap+f ++q +++fa+vh++FGasnv kll+ lp ++r++a+ ++++eA+ar+rdPvyG+v++i
  Zpz_sc00010.1.g00110.1.am.mk  81 PCGACKFLRRKCASDCIFAPHFDQDQgAAQFAAVHRVFGASNVAKLLNYLPIDKRTEAVITICFEAQARLRDPVYGCVSHI 161
                                   7*************************89***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq+ +l++el++++++
  Zpz_sc00010.1.g00110.1.am.mk 162 FSLQQQIVNLQSELNYVQNH 181
                                   ****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.49980182IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3881179IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGVIACDETS QESRGGHSQI HQSNKQTYTQ YLQPTALASK PRPTSIGSLG AGAGAMSSSV  60
AGGAGGCGGA GGGSGGGGGG PCGACKFLRR KCASDCIFAP HFDQDQGAAQ FAAVHRVFGA  120
SNVAKLLNYL PIDKRTEAVI TICFEAQARL RDPVYGCVSH IFSLQQQIVN LQSELNYVQN  180
HLAAMEQQQQ VLSPAQPLIP MTGAFTELQP ASNIQANVDK SYLLPTEQQQ QYVHMGESSG  240
GAGGSGGTDD LYELARGLLN RHGRVDGSEE PPQPKHHVVV GRGCQGANLL LNKMPGSRLQ  300
RRNEASGRVL AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-34771827111LOB family transfactor Ramosa2.1
5ly0_B4e-34771827111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00010.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9066212e-44KF906621.1 Zoysia japonica microsatellite Zj2008 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160420.11e-61LOB domain-containing protein 30
RefseqXP_024995935.19e-62LOB domain-containing protein 30
RefseqXP_027102496.18e-62LOB domain-containing protein 30-like
TrEMBLA0A1E5UT082e-62A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRINGTraes_4DL_A2012EA68.11e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-42LBD family protein