PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma98g00210.1 | ||||||||
Common Name | ZOSMA_98G00210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Trihelix | ||||||||
Protein Properties | Length: 348aa MW: 37691.7 Da PI: 9.9226 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.3 | 6.5e-16 | 40 | 133 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgk.........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e+l+Li+a+r ++er + +++ +W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e k Zosma98g00210.1 40 WTLHETLVLITAKRLDDERRALSPkpnltnnpsssgntaspppqcgggrSAELRWKWVENYCWRNGCLRSQNQCNDKWDNLLRDYKKVRHYEMK 133 **************66666664433445555666667777888888888***************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.993 | 32 | 121 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.2E-10 | 39 | 131 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSSSSPPTSH TPLLPSHHLL PPPTSSSTSL LPREYRKGNW TLHETLVLIT AKRLDDERRA 60 LSPKPNLTNN PSSSGNTASP PPQCGGGRSA ELRWKWVENY CWRNGCLRSQ NQCNDKWDNL 120 LRDYKKVRHY EMKLVTLLPK DCKNEGAGVS GGSDLPPNNN NDGSYWKMEK HERKERNLPA 180 NLVAEVFHAL TDVLNRRNSC KGGQHHNAIC GSNSNINPLQ LTISPRRPSL SIMPVVAAAS 240 MAFTPAVPPS QSTSTLAAFG HPPLSTIRAP TPVPPMKTHP PEPSVLGIRM ILSRSLAACL 300 KSQCLCVQTG SSGLESDKRC INAGNSSSGM RGEARETAPG GYGTGRT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NJE8 | 0.0 | A0A0K9NJE8_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 5e-46 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma98g00210.1 |