PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma78g00140.1
Common NameZOSMA_78G00140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 375aa    MW: 42097.1 Da    PI: 8.0916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma78g00140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30199257259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers +dp v++itY+ eHnh+
  Zosma78g00140.1 199 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSIKDPGVFVITYTAEHNHS 257
                      79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29184259IPR003657WRKY domain
PROSITE profilePS5081132.948193259IPR003657WRKY domain
SuperFamilySSF1182901.26E-25196259IPR003657WRKY domain
SMARTSM007749.8E-36198258IPR003657WRKY domain
PfamPF031061.3E-24200256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEEGDWDLQA VVRGCNRGGD GGRRSLDTGT SAATIEGNYI CSTTPHVSSS LVQEEYHGSI  60
SCEFRKEEEE QFGHDVFFHF PNLSTPSPSI ESWAQELEQF YKPFFPSNPT FKPSFSLSSS  120
MPPLTKPHIQ KHQKQILSSS PLFHLQNNGG FAPSPSPSGK QQQRPASRLI ATNTTTRPKR  180
RKNQQKSVVC HVPADGLSSD MWAWRKYGQK PIKGSPYPRG YYRCSSSKGC LARKQVERSI  240
KDPGVFVITY TAEHNHSVPT HRNSLAGSVR NKASQQSKPT ASPMHSTTDT KVRRSRWFNP  300
VEEEVETVVP KVKKEGEMMD NKDDDNGMLL MSDMQMLCED DLMLLDEDEQ LNSGKHFPAF  360
PSWPWISNQT LQSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-18189260880Disease resistance protein RRS1
5w3x_D3e-18189260880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NNQ80.0A0A0K9NNQ8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-47WRKY family protein