PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma40g00280.1 | ||||||||
Common Name | ZOSMA_40G00280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39641.9 Da PI: 9.2761 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.4e-11 | 169 | 214 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+ lP++ +K +Ka+iL + eY+ +L Zosma40g00280.1 169 HHMISERKRREKLNKSFFALRSELPPR-----TKKDKASILMATREYLMEL 214 68899*********************9.....8**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.54E-9 | 163 | 219 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-14 | 163 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.037 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 166 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 169 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDEYSSVREE FEHWSSTSGG GIADSCHNLG GASRDYWPDE LGRLASVQHR RRRSRNLPTP 60 EKDDDEMTKA MIVVLSSPTN TSPSGSTTSS SKVDHGRLGF RQYNSSEKVF GIDQKLKSKV 120 NESRPNSTKL IFSMMRSIND RRVAQLAAAS AAAASVQEHH YTKTDNQVHH MISERKRREK 180 LNKSFFALRS ELPPRTKKDK ASILMATREY LMELKSRISI IKSKNQELEN HLSYYGEEST 240 SVKMDINEKQ RIEISRNIGL ECSISGMQEV NGRILVRIEE NWNVIDLVLH ILRCLKVMGN 300 INLVSMNHLS ATATLVVHIK VESDLDVTNL HKSIEREIDE TLKIFNSLV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | ERKRRE |
2 | 174 | 179 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P331 | 0.0 | A0A0K9P331_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma40g00280.1 |