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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma330g00130.1 | ||||||||
Common Name | ZOSMA_330G00130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 29117.3 Da PI: 10.073 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.5 | 1.8e-32 | 30 | 122 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Flk+++e++ed +++ ++sws nsfvv+d ++f++ +Lp+yFkh+nf+SF+RQLn YgFkkv++e+ weF+++ F kg+k+ll Zosma330g00130.1 30 FLKNTFEMVEDLSTDVIVSWSFGRNSFVVWDLQKFSDILLPRYFKHKNFTSFTRQLNCYGFKKVRSER---------WEFANEFFLKGQKHLL 113 9********************999******************************************99.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++ikrk+++ Zosma330g00130.1 114 KNIKRKNNS 122 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.2E-44 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-29 | 27 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-33 | 28 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.3E-15 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-27 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-15 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-15 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MERPKLEVCE IEAGESLNPK FDEDQLLTPF LKNTFEMVED LSTDVIVSWS FGRNSFVVWD 60 LQKFSDILLP RYFKHKNFTS FTRQLNCYGF KKVRSERWEF ANEFFLKGQK HLLKNIKRKN 120 NSYQHQTISK ERQWKRQIQQ HRKFVGIFME SELDAKFEQL MKDENTNMRE IYNLKQQIQF 180 MEKRIRERER KHQEMMGLIA RILQKTTYNH SNFNDGSYVL FSIANYNHSN LIARINFKNS 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-21 | 6 | 119 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-21 | 6 | 119 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-21 | 6 | 119 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856610.1 | 9e-52 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_021856611.1 | 9e-52 | heat shock factor protein HSF30 isoform X1 | ||||
Refseq | XP_021856613.1 | 8e-52 | heat shock factor protein HSF30 isoform X2 | ||||
Refseq | XP_021856614.1 | 8e-52 | heat shock factor protein HSF30 isoform X2 | ||||
Refseq | XP_021856615.1 | 7e-52 | heat shock factor protein HSF30 isoform X3 | ||||
TrEMBL | A0A0K9PAE1 | 1e-177 | A0A0K9PAE1_ZOSMR; Heat stress transcription factor A-7a | ||||
STRING | EOY29928 | 2e-50 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-52 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma330g00130.1 |