PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma30g00880.1
Common NameZOSMA_30G00880
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 859aa    MW: 93319.1 Da    PI: 6.5487
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma30g00880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.8e-182582457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++  +++p+ ++r+++ k      +++++q+kvWFqNrR +ek+
  Zosma30g00880.1 25 YVRYTPEQVEVLERVYTDCPKPTSQRRQQIIKDFpilgNIETKQIKVWFQNRRCREKQ 82
                     6789****************************************************97 PP
2START148.27.5e-471713782205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee++++++ ka+ ++  Wv+   +++g++++  ++ s+++ g a+ra+g+v  ++   v+ell+d++ W ++++ + +l vi ++  g+++l
  Zosma30g00880.1 171 IAEETLAQFLVKATGTAVKWVQILGMKPGPDSIGFVAVSNNCGGIAARACGLVSLEPS-KVKELLKDRPSWYRDCRNVNVLTVIPTAngGTIEL 263
                      689999****************************************************.**************************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p     s++vRae+lpSg+l++p+++g s +++v+hvdl+++ ++++lr+
  Zosma30g00880.1 264 VYMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTAATGGPPgppASNFVRAEMLPSGFLVRPCEGG-SMIHIVDHVDLDASNVPEVLRP 356
                      ******************************************9988899*********************9.********************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s ++ ++k++ a+l + ++
  Zosma30g00880.1 357 LYESPRIIAQKMTIAALSHVKQ 378
                      ****************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2561983IPR001356Homeobox domain
SMARTSM003891.0E-132187IPR001356Homeobox domain
CDDcd000864.40E-152484No hitNo description
SuperFamilySSF466897.7E-152485IPR009057Homeodomain-like
PfamPF000462.6E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-172682IPR009057Homeodomain-like
CDDcd146863.15E-676115No hitNo description
PROSITE profilePS5084824.848161388IPR002913START domain
SMARTSM002341.3E-41170379IPR002913START domain
PfamPF018523.6E-44171378IPR002913START domain
SuperFamilySSF559616.04E-35171379No hitNo description
Gene3DG3DSA:3.30.530.207.5E-22171352IPR023393START-like domain
PfamPF086701.6E-41709857IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MEMVLSQPQL GKGSGGGGQL DAGKYVRYTP EQVEVLERVY TDCPKPTSQR RQQIIKDFPI  60
LGNIETKQIK VWFQNRRCRE KQRKETSRLQ TANRKLSALN KLLMEENERL QKQLSHVVYD  120
NGLVRQQLHI TTIATTDNSC DSVVTTSQHH QKNPSQNSQR DLNSPSGLLA IAEETLAQFL  180
VKATGTAVKW VQILGMKPGP DSIGFVAVSN NCGGIAARAC GLVSLEPSKV KELLKDRPSW  240
YRDCRNVNVL TVIPTANGGT IELVYMQTYA PTTLASARDF WTLRYTTSLE DGSLVICERS  300
LTAATGGPPG PPASNFVRAE MLPSGFLVRP CEGGSMIHIV DHVDLDASNV PEVLRPLYES  360
PRIIAQKMTI AALSHVKQIS QETSGEVVYG GGRQPAMLRA CSQRLSHGFN DAVNGFDDDG  420
WALMSNDGAE DVTIAINSSP SKLLASCGNN SSILSTLGVG VLCAKASMLL QNVPPALLVR  480
FLREHRSEWA DCGVDAYSAA ALKANPYSVP CANSGNGFIG NQVILPLSHT AENEEFLEVI  540
RLEGRGLVSD DVFSSRDMFL LQLCSGIDES ASGGCAQLVF APIDESFADN APLLPSGFRV  600
IPLEPKANGP AGTQTLDLAS TLEVGSRTSA GFTSDNSTTN VYNLRSVLTI AFQFTYESHL  660
FDNVAAMARQ YVRGVVASVQ RVSMAIAPSN NLGSHLTPKQ PPCSPEAVTL TQWISNSYRF  720
FLGLDLVRGG ISHDAGEWLL KHVWQHSDPI ICCSIKSNPS SSPICTFANQ AGLDMLETTF  780
AALQSITLDK ILDNGGQRIL FSEFPKIMQQ GFANLHTGIC TSSMGRLVSY DQAVAWKVLN  840
ENDSCHCLAF MFLNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020273236.10.0homeobox-leucine zipper protein HOX32-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0K9P9Q40.0A0A0K9P9Q4_ZOSMR; Homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein