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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma2g02180.1 | ||||||||
Common Name | ZOSMA_2G02180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 26906.8 Da PI: 10.1673 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.9 | 1.5e-24 | 26 | 74 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ rqv fskRr+g++KKA+ELSvLC+ae++v++fs+ gk++ + Zosma2g02180.1 26 KKIENEEARQVCFSKRRTGLFKKASELSVLCGAEISVVVFSPAGKVFSF 74 68********************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-35 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.754 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.60E-41 | 19 | 86 | No hit | No description |
SuperFamily | SSF55455 | 8.24E-31 | 19 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-27 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MIKPGKIEIK KKKKKTSIGR QKIEIKKIEN EEARQVCFSK RRTGLFKKAS ELSVLCGAEI 60 SVVVFSPAGK VFSFGHPSVD SVIDRYVATL NNPTTAAHVN NGTNNISSSN NTGSSHGLNK 120 QYMDVTALLD AERKKKAALE ENSKSIDGWW DVVNNIDTLG MDELQELKKM MEELRCKLLL 180 NRSQHLFRQV RQTANTPISI YNNMFMGGPS GTSSIPVQPN PAVLALPHTN HYGVFDHRTY 240 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 18 | 86 | 1 | 69 | MEF2C |
5f28_B | 1e-16 | 18 | 86 | 1 | 69 | MEF2C |
5f28_C | 1e-16 | 18 | 86 | 1 | 69 | MEF2C |
5f28_D | 1e-16 | 18 | 86 | 1 | 69 | MEF2C |
6byy_A | 1e-16 | 18 | 86 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-16 | 18 | 86 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-16 | 18 | 86 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-16 | 18 | 86 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010906925.2 | 6e-59 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0K9PAV4 | 1e-180 | A0A0K9PAV4_ZOSMR; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_008791999.1 | 2e-51 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-29 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Zosma2g02180.1 |