PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma281g00040.1
Common NameZOSMA_281G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 469aa    MW: 50802.8 Da    PI: 7.4721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma281g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30234292259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r++ed +v+++tYeg+H h+
  Zosma281g00040.1 234 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCSEDATVLITTYEGNHSHP 292
                       8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-33218294IPR003657WRKY domain
SuperFamilySSF1182901.57E-27226294IPR003657WRKY domain
PROSITE profilePS5081129.746228294IPR003657WRKY domain
SMARTSM007749.7E-37233293IPR003657WRKY domain
PfamPF031069.1E-27234292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAERSTDSAL FFSEENCPRR RVEEVDFFSK SRSVDDDGVE DNSGKDLHPE DDDHARIGSQ  60
VETGLRLLTG NTAEEEVAPE NGGEISALQG DLNRVQRENR RLKTMVNQLT NNYSVLYNHL  120
VLATSQQKTP DLNRQLQASK KDDMITTISK NNRNKSPDTN ISGDDNGATT LSLPIKRPPL  180
PIDHRSGPSS PSSSKFLKPI DEKLESTMDQ GSIDLPCRKA RVSVRARSEA PMINDGCQWR  240
KYGQKMAKGN PCPRAYYRCT MASGCPVRKQ VQRCSEDATV LITTYEGNHS HPLPQTATAM  300
ANTTTAAATM LLAGSTTSIN SSSISTKDMP LLNPSFLSSS VDPYTSSMAT FSASVPFPTI  360
TLDLTKPLPN PTQPQRLQQH PSSPFAMPIS MYNKPGNAVH FAQQMRQPPS VVETVTAAIK  420
SDPNFTVALA SAITSYMNGG GSPTIPPGGT PGSPQFPQSC TTFSNSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21220294174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909377.11e-125probable WRKY transcription factor 47
TrEMBLA0A0K9PCY50.0A0A0K9PCY5_ZOSMR; Putative WRKY transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-69WRKY family protein