PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma279g00020.1
Common NameZOSMA_279G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 359aa    MW: 40324.3 Da    PI: 7.5259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma279g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05195214120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Zosma279g00020.1 195 FSCPVCAKTFNRYNNMQMHM 214
                       89*****************9 PP
2zf-C2H214.50.0001279301123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Zosma279g00020.1 279 FMCRKCGKAFAVRGDWRTHEKNC 301
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-5191217No hitNo description
SMARTSM003550.14195217IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159195222IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-6195214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-6260299No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6266299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808279299IPR007087Zinc finger, C2H2
SMARTSM0035549279299IPR015880Zinc finger, C2H2-like
SMARTSM00355150305328IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSTDPYANFF KGQMKNFFVP FSEQVQTSQQ QPPPPPPPPT GATMHHHYPT YNFYNNYMSC  60
NYTNYINIQQ YSPPSPPLRE ALPLLSLTPT KRAEEMDVVE DSCSGFDGSM DKDEEEHQGV  120
TVSLHIGLPS PTDHAVDLIS RVSNTSELVG QSDDVAGSGT GAVSLGYSTT TVGRLNKGQY  180
WIPTPSQILI GPTQFSCPVC AKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP  240
CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN  300
CGKLWYCICG SDFKHKRSLK DHIKAFGHGH AAYGIDVFEE DEDPSSEIEQ DCDHRSTE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798774.11e-160zinc finger protein WIP2-like
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0K9PDS70.0A0A0K9PDS7_ZOSMR; Zinc finger-like protein
STRINGXP_008798774.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]